So, I'm quite new here and I use Sby's -loader, but I think these are the ways to remove those numbers:
You have to delete the text lines (example "Default/FinishesCounter.swf") from your "Mods" .txt-file that is located in your $INIT$ folder (Mods > $INIT$ > Mods.txt)
Or
Use " ; " in front of the text line in this "Mods" .txt-file, so that when you start the game it won't be included (example " ;Default/FinishesCounter.sw"
Or
Delete all these counter swf-files, which should be located in Default -folder ( Mods > $INIT$ > Default )
These should work, I don't know any other way. I recommend using " ; " method, so that you can always undo what you have done and start again see how those numbers start rolling to new heights.